Publication

Host genomics of the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment

Journal Paper/Review - Aug 18, 2020

Units
PubMed
Doi

Citation
Thorball C, Klimkait T, Yerly S, Battegay M, Rauch A, Schmid P, Bernasconi E, Cavassini M, Kouyos R, Günthard H, Metzner K, Fellay J, Perreau M, Böni J, Wieser M, Borghesi A, Bachmann N, Von Siebenthal C, Vongrad V, Turk T, Neumann K, Beerenwinkel N, Bogojeska J, Roth V, Kok Y, Parbhoo S, Swiss HIV Cohort Study. Host genomics of the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment. J Acquir Immune Defic Syndr 2020
Type
Journal Paper/Review (English)
Journal
J Acquir Immune Defic Syndr 2020
Publication Date
Aug 18, 2020
Issn Electronic
1944-7884
Brief description/objective

BACKGROUND
The primary hurdle for the eradication of HIV-1 is the establishment of a latent viral reservoir early after primary infection. Here we investigated the potential influence of human genetic variation on the HIV-1 reservoir size and its decay rate during suppressive antiretroviral treatment (ART).

SETTING
Genome-wide association study and exome sequencing study to look for host genetic determinants of HIV-1 reservoir measurements in patients enrolled in the Swiss HIV Cohort Study (SHCS), a nation-wide prospective observational study.

METHODS
We measured total HIV-1 DNA in peripheral blood mononuclear cells from study participants, as a proxy for the reservoir size, at three time points over a median of 5.4 years, and searched for associations between human genetic variation and two phenotypic readouts: the reservoir size at the first time point and its decay rate over the study period. We assessed the contribution of common genetic variants using genome-wide genotyping data from 797 patients with European ancestry enrolled in the Swiss HIV Cohort Study and searched for a potential impact of rare variants and exonic copy number variants using exome sequencing data generated in a subset of 194 study participants.

RESULTS
Genome- and exome-wide analyses did not reveal any significant association with the size of the HIV-1 reservoir or its decay rate on suppressive ART.

CONCLUSIONS
Our results point to a limited influence of human genetics on the size of the HIV-1 reservoir and its long-term dynamics in successfully treated individuals.