Publication

A toolbox for nonlinear regression in R: the package nlstools

Journal Paper/Review - Aug 27, 2015

Units
Keywords
confidence regions, residuals, diagnostic tools, resampling techniques, starting values, 6-minute walk test, nonlinear regression, diagnostic tools, R
Contact

Citation
Baty F. A toolbox for nonlinear regression in R: the package nlstools. Journal of Statistical Software 2015; 66:1-21.
Type
Journal Paper/Review (English)
Journal
Journal of Statistical Software 2015; 66
Publication Date
Aug 27, 2015
Pages
1-21
Brief description/objective

Nonlinear regression models are applied in a broad variety of scientific fields. Various R functions are already dedicated to fitting such models, among which the function nls() has a prominent position. Unlike linear regression fitting of nonlinear models relies on non-trivial assumptions and therefore users are required to carefully ensure and validate the entire modeling. Parameter estimation is carried out using some variant of the least- squares criterion involving an iterative process that ideally leads to the determination of the optimal parameter estimates. Therefore, users need to have a clear understanding of the model and its parameterization in the context of the application and data considered, an a priori idea about plausible values for parameter estimates, knowledge of model diagnostics procedures available for checking crucial assumptions, and, finally, an under- standing of the limitations in the validity of the underlying hypotheses of the fitted model and its implication for the precision of parameter estimates. Current nonlinear regression modules lack dedicated diagnostic functionality. So there is a need to provide users with an extended toolbox of functions enabling a careful evaluation of nonlinear regression fits. To this end, we introduce a unified diagnostic framework with the R package nlstools. In this paper, the various features of the package are presented and exemplified using a worked example from pulmonary medicine.